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9ab6971Claude	1	# GLUECRON BUILD BIBLE
	2
	3	This file is the single source of truth for the GlueCron build.
	4
	5	Every Claude agent MUST read this file in full before touching code. No exceptions.
	6
	7	GlueCron is a GitHub replacement — AI-native code intelligence, green ecosystem enforcement, git hosting, automated CI. It is production infrastructure for multiple downstream platforms. Production cannot stop.
	8
	9	---
	10
	11	## 1. AGENT POLICY (READ FIRST, FOLLOW ALWAYS)
	12
	13	### 1.1 Required reads at session start
	14	1. `BUILD_BIBLE.md` (this file) — complete
	15	2. `CLAUDE.md` — stack + architecture
	16	3. `README.md` — user-facing overview
	17	4. Most recent commit on the current branch (`git log -1 --stat`)
	18
	19	### 1.2 Do-not-undo rule
	20	- Anything listed in §4 LOCKED BLOCKS is shipped and must not be deleted, renamed, or semantically altered without the owner's explicit written permission in the current session.
	21	- "Refactor" is not permission. "Clean up" is not permission. "Simplify" is not permission.
	22	- If a locked file seems wrong, open an issue in the plan and keep going on a new block.
	23
	24	### 1.3 Continuous-build rule
	25	- The owner runs many parallel projects. Do not stop work to ask for clarification that can be inferred from this file.
	26	- Default behaviour when a block is partially complete: finish it, run tests, commit, push, start the next block.
	27	- Only stop for genuinely blocking decisions: destructive operations, architectural reversals, requests outside this plan, or repeated test failures you can't diagnose.
	28	- Never stop because "the session might run out." Commit what works and keep building.
	29
	30	### 1.4 Branch + commit rules
	31	- Development branch: whatever the current session was told (check session opening message). Fall back to `main` if none given.
	32	- One commit per completed block. Message format: `feat(BLOCK-ID): <summary>`.
	33	- Push after every commit with `git push -u origin <branch>`.
	34	- Never force-push. Never `--no-verify`. Never amend published commits.
	35
	36	### 1.5 Quality bars (non-negotiable)
	37	- `bun test` must pass before every commit.
	38	- New features ship with tests in `src/__tests__/`.
	39	- New routes use `softAuth` or `requireAuth` middleware.
	40	- New DB tables have a corresponding migration in `drizzle/`.
	41	- AI features use `isAiAvailable()` guards and degrade gracefully without `ANTHROPIC_API_KEY`.
	42	- Every user-facing failure mode has a fallback — no 500s reach the UI.
	43
	44	### 1.6 Green-ecosystem-by-default
	45	- Every new repo auto-configures: gates on, branch protection on, labels seeded, CODEOWNERS synced, welcome issue posted.
	46	- Users can opt out per feature but defaults are maximum-green.
	47	- Nothing broken ever reaches production, the website, or the customer.
	48
15e65d2Claude	49	### 1.7 Parallelism rule (added per owner request)
	50	- Default to spawning sub-agents whenever work can be parallelised. Owner-cost of an idle main thread is high; owner-cost of an extra agent is near-zero.
	51	- Independent files = parallel agents. Schema-only edits, new route files, doc updates, test additions, codebase research — all of these run in parallel by default unless they collide.
	52	- Coordinate file ownership: one agent per file. Never let two agents edit the same file. Mounting + middleware integration stay on the main thread to avoid merge conflicts.
	53	- When launching multiple agents, send them in a single message with multiple Agent tool calls so they actually run concurrently.
	54	- The main thread is responsible for: reviewing each agent's output before integrating, running the test suite, and committing. Trust-but-verify — read the changes, don't just rely on the agent's summary.
	55
9ab6971Claude	56	---
	57
	58	## 2. GITHUB PARITY SCORECARD
	59
	60	Legend: ✅ shipped · 🟡 partial · ❌ not built
	61
	62	### 2.1 Repository hosting
	63	\| Feature \| Status \| Notes \|
	64	\|---\|---\|---\|
	65	\| Git Smart HTTP (clone / push / fetch) \| ✅ \| `src/routes/git.ts`, `src/git/protocol.ts` \|
	66	\| SSH keys \| ✅ \| `ssh_keys` table, `src/routes/settings.tsx` \|
	67	\| Public / private visibility \| ✅ \| `repositories.isPrivate` \|
	68	\| Forking \| ✅ \| `src/routes/fork.ts` \|
	69	\| Stars \| ✅ \| `stars` table, `/:owner/:repo/star` \|
	70	\| Topics \| ✅ \| `repo_topics` table \|
	71	\| Archive / disable repo \| ❌ \| schema has flags; no UI \|
	72	\| Repository transfer \| ❌ \| — \|
	73	\| Template repositories \| ❌ \| — \|
	74	\| Repository mirroring \| ❌ \| — \|
	75
	76	### 2.2 Code browsing
	77	\| Feature \| Status \| Notes \|
	78	\|---\|---\|---\|
	79	\| File tree browser \| ✅ \| `src/routes/web.tsx` \|
	80	\| Syntax highlighting \| ✅ \| 40+ languages, `src/lib/highlight.ts` \|
	81	\| Commit history \| ✅ \| \|
	82	\| Diffs \| ✅ \| \|
	83	\| Blame \| ✅ \| \|
	84	\| Raw file download \| ✅ \| \|
	85	\| Branch switcher \| ✅ \| \|
	86	\| Tag listing \| ✅ \| new this build \|
	87	\| Code search (ILIKE) \| ✅ \| per-repo + global \|
3cbe3d6Claude	88	\| Semantic / embedding search \| ✅ \| D1 — `code_chunks` table + lexical fallback, optional Voyage `voyage-code-3`; `src/lib/semantic-search.ts`, `src/routes/semantic-search.tsx` \|
9ab6971Claude	89	\| Symbol / xref navigation \| ❌ \| — \|
	90
	91	### 2.3 Collaboration
	92	\| Feature \| Status \| Notes \|
	93	\|---\|---\|---\|
	94	\| Issues (CRUD / comments / labels / close) \| ✅ \| \|
	95	\| Milestones \| ✅ \| `src/routes/insights.tsx` \|
	96	\| Pull requests (CRUD / review / merge) \| ✅ \| \|
	97	\| PR inline comments \| ✅ \| file+line anchored \|
6fc53bdClaude	98	\| Draft PRs \| ✅ \| create as draft, ready-for-review toggle, dedicated tab, merge blocked until ready \|
	99	\| Reactions (emoji) \| ✅ \| 8 reactions, toggle via `POST /api/reactions/:t/:id/:emoji/toggle` on issues + PRs + comments \|
9ab6971Claude	100	\| Mentions + notifications \| ✅ \| `src/routes/notifications.tsx` \|
	101	\| Code owners \| ✅ \| `src/lib/codeowners.ts` \|
24cf2caClaude	102	\| Issue templates \| ✅ \| `.github/ISSUE_TEMPLATE.md` auto-prefills new issues; frontmatter stripped; `src/lib/templates.ts` \|
	103	\| PR templates \| ✅ \| `.github/PULL_REQUEST_TEMPLATE.md` auto-prefills new PRs; `src/lib/templates.ts` \|
	104	\| Saved replies \| ✅ \| per-user canned comments, unique-shortcut, `/settings/replies`, `/api/user/replies` \|
9ab6971Claude	105	\| Discussions / forums \| ❌ \| \|
	106	\| Wikis \| ❌ \| \|
	107	\| Projects / kanban \| ❌ \| \|
	108
	109	### 2.4 Automation + AI
	110	\| Feature \| Status \| Notes \|
	111	\|---\|---\|---\|
ad6d4adClaude	112	\| Webhooks (outbound, HMAC signed) \| ✅ \| `src/routes/webhooks.tsx` \|
	113	\| GateTest inbound callback \| ✅ \| `POST /api/hooks/gatetest`, bearer or HMAC \|
	114	\| Backup PAT-auth gate ingest \| ✅ \| `POST /api/v1/gate-runs` \|
9ab6971Claude	115	\| Gate runs (test / secret / AI review) \| ✅ \| `gate_runs` table, `src/routes/gates.tsx` \|
	116	\| Branch protection \| ✅ \| `branch_protection` table + UI \|
	117	\| Auto-repair engine \| ✅ \| `src/lib/auto-repair.ts` \|
	118	\| Secret scanner \| ✅ \| 15 patterns, `src/lib/security-scan.ts` \|
	119	\| AI security review \| ✅ \| Sonnet 4, `src/lib/security-scan.ts` \|
	120	\| AI commit messages \| ✅ \| `src/lib/ai-generators.ts` \|
	121	\| AI PR summaries \| ✅ \| \|
3cbe3d6Claude	122	\| AI changelogs \| ✅ \| auto on release create; arbitrary-range viewer at `/:owner/:repo/ai/changelog?from=&to=` (D7) \|
9ab6971Claude	123	\| AI code review \| ✅ \| `src/lib/ai-review.ts` \|
	124	\| AI merge conflict resolver \| ✅ \| `src/lib/merge-resolver.ts` \|
	125	\| AI chat (global + repo) \| ✅ \| `src/routes/ask.tsx` \|
3cbe3d6Claude	126	\| AI explain-this-codebase \| ✅ \| D6 — per-commit cached markdown, `GET /:owner/:repo/explain`, `src/lib/ai-explain.ts` + `src/routes/ai-explain.tsx` \|
	127	\| AI PR triage \| ✅ \| D3 — Claude Haiku suggests labels/reviewers/priority as an AI comment on PR create; `triagePullRequest` in `src/lib/ai-generators.ts`, wired in `src/routes/pulls.tsx` \|
5e888b7Claude	128	\| GitHub Actions equivalent (workflow runner) \| ✅ \| `src/lib/workflow-parser.ts`, `src/lib/workflow-runner.ts`, `src/routes/workflows.tsx`; `.gluecron/workflows/*.yml` auto-discovered on push; Bun subprocess executor, per-step timeouts, size-capped logs \|
3cbe3d6Claude	129	\| Dependabot equivalent (AI dep bumper) \| ✅ \| D2 — `dep_update_runs` table, npm registry fetch, plan + apply bumps, creates `gluecron/dep-update-*` branch + PR row via git plumbing. `src/lib/dep-updater.ts`, `src/routes/dep-updater.tsx`, settings UI at `/:owner/:repo/settings/dep-updater`. \|
9ab6971Claude	130	\| Code scanning UI \| 🟡 \| data exists, no dedicated UI page \|
3cbe3d6Claude	131	\| Copilot code completion \| ✅ \| D9 — `POST /api/copilot/completions` (PAT/OAuth/session), `GET /api/copilot/ping`. `src/lib/ai-completion.ts`, `src/routes/copilot.ts`. LRU-cached, rate-limited 60/min. \|
	132	\| Semantic code search \| ✅ \| D1 — see 2.2 \|
9ab6971Claude	133
	134	### 2.5 Platform
	135	\| Feature \| Status \| Notes \|
	136	\|---\|---\|---\|
	137	\| Dashboard \| ✅ \| `src/routes/dashboard.tsx` \|
	138	\| Explore / discover \| ✅ \| \|
	139	\| Global search \| ✅ \| repos / users / issues / PRs \|
	140	\| Insights (graph, contributors, green rate) \| ✅ \| `src/routes/insights.tsx` \|
	141	\| Releases + tags \| ✅ \| AI changelog \|
	142	\| Personal access tokens \| ✅ \| SHA-256 hashed \|
058d752Claude	143	\| OAuth app provider \| ✅ \| `src/routes/oauth.tsx`, `src/routes/developer-apps.tsx`, `src/lib/oauth.ts`; `oauth_apps` + `oauth_authorizations` + `oauth_access_tokens` tables \|
9ab6971Claude	144	\| GitHub Apps equivalent \| ❌ \| \|
	145	\| GraphQL API \| ❌ \| REST only \|
058d752Claude	146	\| Organizations + teams \| ✅ \| B1+B2+B3 shipped: `src/routes/orgs.tsx`, `src/lib/orgs.ts`; org-owned repos (`repositories.orgId`); team-based CODEOWNERS (`@org/team` resolution) \|
9ab6971Claude	147	\| Enterprise SAML / SSO \| ❌ \| \|
058d752Claude	148	\| 2FA / TOTP \| ✅ \| `src/routes/settings-2fa.tsx`, `src/lib/totp.ts`; `user_totp` + `user_recovery_codes` tables \|
	149	\| Passkeys / WebAuthn \| ✅ \| `src/routes/passkeys.tsx`, `src/lib/webauthn.ts`; `user_passkeys` + `webauthn_challenges` tables \|
25a91a6Claude	150	\| Packages registry (npm / docker / etc) \| ✅ \| `src/lib/packages.ts`, `src/routes/packages-api.ts`, `src/routes/packages.tsx`; npm protocol (packument, tarball, publish, yank); PAT (`glc_`) auth via Authorization header; container registry deferred \|
	151	\| Pages / static hosting \| ✅ \| `src/lib/pages.ts`, `src/routes/pages.tsx`; serves blobs from bare git at latest `gh-pages` commit; per-repo settings (source branch/dir, custom domain); short-cache headers \|
9ab6971Claude	152	\| Gists \| ❌ \| \|
	153	\| Sponsors \| ❌ \| \|
	154	\| Marketplace \| ❌ \| \|
25a91a6Claude	155	\| Environments / deployment tracking \| ✅ \| `src/routes/deployments.tsx` — grouped by env, success-rate rollup, per-deploy detail. Protected environments (`src/routes/environments.tsx`, `src/lib/environments.ts`) with reviewer-gated approval, branch-glob restrictions, approve/reject decisions recorded in `deployment_approvals` \|
9ab6971Claude	156	\| Merge queues \| ❌ \| \|
	157	\| Required checks matrix \| 🟡 \| branch_protection has single flag, no matrix \|
	158
	159	### 2.6 Observability + safety
	160	\| Feature \| Status \| Notes \|
	161	\|---\|---\|---\|
	162	\| Rate limiting \| ✅ \| `src/middleware/rate-limit.ts` \|
	163	\| Request-ID tracing \| ✅ \| `src/middleware/request-context.ts` \|
	164	\| Health / readiness / metrics \| ✅ \| `/healthz` `/readyz` `/metrics` \|
	165	\| Audit log (table) \| ✅ \| `audit_log` table \|
6fc53bdClaude	166	\| Audit log UI \| ✅ \| `/settings/audit` (personal) + `/:owner/:repo/settings/audit` (per-repo, owner-only) \|
9ab6971Claude	167	\| Traffic analytics per repo \| ❌ \| \|
24cf2caClaude	168	\| Email notifications \| ✅ \| opt-in per kind (mention/assign/gate-fail) via `/settings`; provider-pluggable `src/lib/email.ts` (log default, resend in prod) \|
9ab6971Claude	169	\| Email digest \| ❌ \| \|
	170	\| Mobile PWA \| 🟡 \| responsive CSS, no manifest \|
	171	\| Native mobile apps \| ❌ \| \|
6fc53bdClaude	172	\| Dark mode \| ✅ \| default \|
	173	\| Light-mode toggle \| ✅ \| `/theme/toggle` + `theme` cookie, pre-paint script avoids FOUC, nav sun/moon icon \|
9ab6971Claude	174	\| Keyboard shortcuts \| ✅ \| `/shortcuts` page \|
	175	\| Command palette \| 🟡 \| Cmd+K → Ask AI, no generic palette \|
	176
	177	---
	178
	179	## 3. BUILD PLAN (BLOCKS)
	180
	181	Each block is a self-contained unit. Order matters for dependencies. Each block ends with tests + commit + push.
	182
	183	### BLOCK A — Hardening the current surface
	184	Polish what's shipped before adding more. Priority: do this first if parity gaps are minor.
6fc53bdClaude	185	- A1 — Dark/light theme toggle (cookie, CSS variable swap) ✅
	186	- A2 — Audit log UI page (`/settings/audit` + `/:owner/:repo/settings/audit`) ✅
	187	- A3 — Reactions UI on issues / PRs / comments (data exists) ✅
	188	- A4 — Draft PR toggle + filter ✅
24cf2caClaude	189	- A5 — Issue + PR templates (`.github/*_TEMPLATE.md` auto-prefill) ✅
	190	- A6 — Saved replies per user ✅
	191	- A7 — Environments + deployment history UI (`deployments` table) ✅
	192	- A8 — Email notifications (opt-in, provider-pluggable) ✅
	193
	194	BLOCK A COMPLETE. Next: BLOCK B (Identity + orgs).
9ab6971Claude	195
	196	### BLOCK B — Identity + orgs
058d752Claude	197	- B1 — Organizations (schema: `organizations`, `org_members`, `teams`, `team_members`) → ✅ shipped (`6563f0a`)
6563f0aClaude	198	- Helpers in `src/lib/orgs.ts`: slug validation, role rank, reserved-slug set, loaders
	199	- Routes in `src/routes/orgs.tsx`: list / create / profile / people / teams / team detail
	200	- Role-based guards: admin adds members, owner grants owner, last-owner demote/remove blocked
	201	- All sensitive actions `audit()`'d (org.create, member.add/role/remove, team.create, team.member.add/remove)
058d752Claude	202	- B2 — Repos owned by orgs (nullable `repositories.orgId`) → ✅ shipped (`7437605`)
	203	- B3 — Team-based CODEOWNERS (`@org/team` resolution) → ✅ shipped (`40d3e3f`)
	204	- B4 — 2FA / TOTP (enroll, recovery codes) → ✅ shipped (`7298a17`)
	205	- B5 — WebAuthn / passkeys → ✅ shipped (`2df1f8c`)
	206	- B6 — OAuth 2.0 provider (third-party apps can request access) → ✅ shipped (pending final commit)
9ab6971Claude	207
	208	### BLOCK C — Runtime + hosting
5e888b7Claude	209	- C1 — Actions-equivalent workflow runner → ✅ shipped (`eafe8c6`)
	210	- Workflow YAML parser (`src/lib/workflow-parser.ts`) — hand-rolled subset
	211	- Background worker (`src/lib/workflow-runner.ts`) — Bun.spawn, size-capped logs, SIGTERM→SIGKILL timeouts
	212	- Auto-discovery from `.gluecron/workflows/*.yml` on default-branch push
	213	- UI at `/:owner/:repo/actions` with manual trigger + cancel
25a91a6Claude	214	- C2 — Package registry (npm protocol) → ✅ shipped
	215	- Packument + tarball + publish + yank via `PUT /npm/<name>` + `GET /npm/<name>`
	216	- PAT (`glc_`) bearer auth for CLI clients; add `//host/npm/:_authToken=<PAT>` to .npmrc
	217	- Container registry deferred (schema ready for it)
	218	- C3 — Pages / static hosting → ✅ shipped
	219	- Serves `/:owner/:repo/pages/*` from the latest successful `pages_deployments` row
	220	- Auto-records on push to the repo's configured source branch (default `gh-pages`)
	221	- Settings UI at `/:owner/:repo/settings/pages` + manual redeploy
	222	- C4 — Environments with protected approvals → ✅ shipped
	223	- Per-repo `environments` with reviewer list + branch-glob allowlist
	224	- Auto-deploy on main is gated by `requiresApprovalFor()`; pending rows show status `pending_approval`
	225	- Approve/reject at `POST /:owner/:repo/deployments/:id/approve\|reject`
9ab6971Claude	226
	227	### BLOCK D — AI-native differentiation
	228	This is where GlueCron beats GitHub outright. Priority: ship these loud.
3cbe3d6Claude	229	- D1 — Semantic code search → ✅ shipped. `src/lib/semantic-search.ts` + `src/routes/semantic-search.tsx`. `code_chunks` table stores chunk embeddings as JSON (upgrade path to `pgvector`). Embedding provider: Voyage AI `voyage-code-3` when `VOYAGE_API_KEY` is set, otherwise deterministic 512-dim hashing fallback. Index via `POST /:owner/:repo/search/semantic/reindex` (owner-only).
	230	- D2 — AI dependency updater → ✅ shipped. `src/lib/dep-updater.ts` + `src/routes/dep-updater.tsx`. `dep_update_runs` table tracks run history. Parses `package.json`, queries `registry.npmjs.org`, plans bumps (skips workspace/github specs + downgrades), writes an `gluecron/dep-update-<ts>` branch via git plumbing (`hash-object` + `mktree` + `commit-tree` + `update-ref`), inserts a pull_requests row with a markdown bump table. Settings UI at `/:owner/:repo/settings/dep-updater` with "Run now".
	231	- D3 — AI PR triage → ✅ shipped. `triagePullRequest` in `src/lib/ai-generators.ts`; hooked into PR create in `src/routes/pulls.tsx` (fire-and-forget). Posts a non-applied "## AI Triage" comment with suggested labels, reviewers, priority, and risk area. Suggestions only — PR author stays in control.
	232	- D4 — AI incident responder (on deploy failure, opens issue with root cause) — NOT STARTED
	233	- D5 — AI code reviewer that blocks merges (enforced via branch protection "AI approval required") — PARTIAL (AI review exists; no branch-protection hook yet)
	234	- D6 — AI "explain this codebase" → ✅ shipped. `src/lib/ai-explain.ts` + `src/routes/ai-explain.tsx`. Samples up to ~25 representative files (~60KB cap), generates a Markdown explanation via Sonnet 4, caches per (repo, commit sha) in `codebase_explanations`. `GET /:owner/:repo/explain` + owner-only `POST /:owner/:repo/explain/regenerate`. Explain link added to `RepoNav`.
	235	- D7 — AI changelog for every commit range → ✅ shipped. `src/routes/ai-changelog.tsx`. `GET /:owner/:repo/ai/changelog?from=&to=(&format=markdown)` — runs `git log` on the range, calls existing `generateChangelog`, renders form + rendered Markdown + copy-box; `format=markdown` returns `text/markdown` for CLI/CI consumers. Caps at 500 commits.
	236	- D8 — AI-generated test suite (reads public API, generates failing tests) — NOT STARTED
	237	- D9 — Copilot-style completion endpoint → ✅ shipped. `src/lib/ai-completion.ts` + `src/routes/copilot.ts`. `POST /api/copilot/completions` (requireAuth accepts PAT/OAuth/session), `GET /api/copilot/ping`. Claude Haiku; in-memory LRU (size 200, 5-min TTL); code-fence stripping; 60/min rate limit per caller.
9ab6971Claude	238
	239	### BLOCK E — Collaboration parity
	240	- E1 — Projects / kanban boards (`projects`, `project_items`, `project_fields`)
	241	- E2 — Discussions (forum threads per repo)
	242	- E3 — Wikis (git-backed, separate bare repo per repo)
	243	- E4 — Gists (user-owned tiny repos)
	244	- E5 — Merge queues (serialised merge with re-test)
	245	- E6 — Required status checks matrix (multiple named checks per branch protection rule)
	246	- E7 — Protected tags
	247
	248	### BLOCK F — Observability + admin
	249	- F1 — Traffic analytics per repo (views, clones, unique visitors)
	250	- F2 — Org-wide insights (green rate across all repos)
	251	- F3 — Admin / superuser panel (user moderation, repo audit)
	252	- F4 — Billing + quotas (storage, AI tokens, bandwidth)
	253
	254	### BLOCK G — Mobile + client
	255	- G1 — PWA manifest + service worker
	256	- G2 — GraphQL API mirror of REST
	257	- G3 — Official CLI (`gluecron` binary in Bun)
	258	- G4 — VS Code extension
	259
	260	### BLOCK H — Marketplace
	261	- H1 — App marketplace (install third-party apps against a repo)
	262	- H2 — GitHub Apps equivalent (bot identities with scoped permissions)
	263
	264	---
	265
	266	## 4. LOCKED BLOCKS (DO NOT UNDO)
	267
	268	Everything below is committed, tested, and load-bearing. Do not delete, rename, or semantically change without owner permission.
	269
	270	### 4.1 Infrastructure (locked)
	271	- `src/app.tsx` — route composition, middleware order, error handlers
	272	- `src/index.ts` — Bun server entry
	273	- `src/lib/config.ts` — env getters (late-binding)
	274	- `src/db/schema.ts` — 27 tables. New tables only via new migration.
	275	- `src/db/index.ts` — lazy proxy DB connection
	276	- `src/db/migrate.ts` — migration runner
	277	- `drizzle/0000_initial.sql`, `drizzle/0001_green_ecosystem.sql` — migrations
058d752Claude	278	- `drizzle/0004_org_owned_repos.sql` (Block B2) — migration, never edited in place
	279	- `drizzle/0005_totp_2fa.sql` (Block B4) — migration, never edited in place
	280	- `drizzle/0006_webauthn_passkeys.sql` (Block B5) — migration, never edited in place
	281	- `drizzle/0007_oauth_provider.sql` (Block B6) — migration, never edited in place
5e888b7Claude	282	- `drizzle/0008_workflows.sql` (Block C1) — migration, never edited in place
25a91a6Claude	283	- `drizzle/0009_packages.sql` (Block C2) — migration, never edited in place
	284	- `drizzle/0010_pages.sql` (Block C3) — migration, never edited in place
	285	- `drizzle/0011_environments.sql` (Block C4) — migration, never edited in place
3cbe3d6Claude	286	- `drizzle/0012_ai_native.sql` (Block D) — migration, never edited in place. Adds `codebase_explanations`, `dep_update_runs`, `code_chunks`.
9ab6971Claude	287
	288	### 4.2 Git layer (locked)
	289	- `src/git/repository.ts` — tree / blob / commits / diff / branches / blame / search / raw / tags / commitsBetween
	290	- `src/git/protocol.ts` — Smart HTTP pkt-line
	291	- `src/hooks/post-receive.ts` — CODEOWNERS sync, gates, auto-deploy, webhook fan-out
	292
	293	### 4.3 Auth + security (locked)
	294	- `src/lib/auth.ts` — bcrypt, session tokens
25a91a6Claude	295	- `src/middleware/auth.ts` — softAuth + requireAuth. Accepts three auth inputs: session cookie (web), OAuth access token (`glct_` prefix, Block B6), and personal access token (`glc_` prefix, Block C2). Invalid bearer → 401 JSON. Cookie flow → /login redirect.
9ab6971Claude	296	- `src/middleware/rate-limit.ts` — fixed-window limiter
	297	- `src/middleware/request-context.ts` — request-ID
	298	- `src/lib/security-scan.ts` — `SECRET_PATTERNS` (exported) + `scanForSecrets` + `aiSecurityScan`
058d752Claude	299	- `src/lib/codeowners.ts` — parser + `ownersForPath` (last-match-wins); team expansion helpers for `@org/team` (Block B3)
	300	- `src/lib/totp.ts` (Block B4) — TOTP enroll / verify / recovery codes
	301	- `src/lib/webauthn.ts` (Block B5) — WebAuthn registration + assertion helpers
	302	- `src/lib/oauth.ts` (Block B6) — OAuth 2.0 provider: authorization code grant, token issuance, scope enforcement
5e888b7Claude	303	- `src/lib/workflow-parser.ts` (Block C1) — YAML subset parser for `.gluecron/workflows/*.yml`. Exports `parseWorkflow(src)` returning `{ ok, workflow \| error }`. Never throws.
	304	- `src/lib/workflow-runner.ts` (Block C1) — shell executor. Exports `executeRun`, `drainOneRun`, `enqueueRun`, `startWorker`. Clones repo to tmpdir, runs each job via `Bun.spawn(["bash","-c",step.run])` with SIGTERM→SIGKILL timeouts, size-capped stdout/stderr, cleans up in `finally`.
25a91a6Claude	305	- `src/lib/packages.ts` (Block C2) — npm protocol helpers: `parsePackageName`, `computeShasum` (sha1), `computeIntegrity` (sha512 base64), `buildPackument`, `resolveRepoFromPackageJson`, `parseRepoUrl`, `tarballFilename`. Pure functions.
	306	- `src/lib/pages.ts` (Block C3) — `onPagesPush` (never throws), `resolvePagesPath` (probe list including pretty URLs + traversal strip), `contentTypeFor` (MIME).
	307	- `src/lib/environments.ts` (Block C4) — `matchGlob`, `listEnvironments`, `getOrCreateEnvironment`, `getEnvironmentByName`, `isReviewer`, `reviewerIdsOf`, `allowedBranchesOf`, `computeApprovalState`, `reduceApprovalState`, `recordApproval`, `requiresApprovalFor`. Empty reviewers list → repo owner approves. Any rejection hard-stops.
9ab6971Claude	308
	309	### 4.4 AI layer (locked)
	310	- `src/lib/ai-client.ts` — Anthropic client + model constants
3cbe3d6Claude	311	- `src/lib/ai-generators.ts` — commit / PR / changelog / issue-triage / pull-request-triage (D3)
9ab6971Claude	312	- `src/lib/ai-chat.ts` — conversational chat
	313	- `src/lib/ai-review.ts` — PR code review
	314	- `src/lib/auto-repair.ts` — worktree-backed repair commits
	315	- `src/lib/merge-resolver.ts` — AI merge conflict resolution
3cbe3d6Claude	316	- `src/lib/ai-explain.ts` (Block D6) — `explainCodebase(...)` + `getCachedExplanation(...)`. Samples up to ~25 representative files (~60KB cap), Sonnet 4, upserts into `codebase_explanations`. Fallback to README-ish synthesis when no key. Never throws.
	317	- `src/lib/ai-completion.ts` (Block D9) — `completeCode({prefix, suffix?, language?, maxTokens?, repoHint?})` via Haiku. Inline LRU (size 200, 5-min TTL) keyed on sha256 of prefix+suffix+language. Code-fence stripping. Never throws. `__test` bundle exposed.
	318	- `src/lib/dep-updater.ts` (Block D2) — `parseManifest`, `queryNpmLatest`, `planUpdates` (injectable `fetchLatest`), `applyBumps`, `runDepUpdateRun`. Creates `gluecron/dep-update-<ts>` branch via git plumbing + opens a PR row. Never throws.
	319	- `src/lib/semantic-search.ts` (Block D1) — `tokenize`, `hashEmbed` (512-dim L2-normalised FNV-1a + sign trick), `embedBatch` (Voyage `voyage-code-3` when `VOYAGE_API_KEY` set, else fallback), `chunkFile`, `isCodeFile`, `indexRepository`, `searchRepository`, `cosine`, `isEmbeddingsProviderAvailable`, `__test` bundle.
9ab6971Claude	320
	321	### 4.5 Platform (locked)
24cf2caClaude	322	- `src/lib/notify.ts` — notification creation + audit log (swallow-failures pattern). Also fans out email to opted-in recipients for `mention\|review_requested\|assigned\|gate_failed`. Exports `__internal` for tests.
	323	- `src/lib/email.ts` — provider-pluggable email sender (`log`\|`resend`). `sendEmail()` never throws. `absoluteUrl()` joins paths against `APP_BASE_URL`.
	324	- `src/lib/templates.ts` — `loadIssueTemplate` / `loadPrTemplate`. Checks standard paths (`.github/`, `.gluecron/`, root, `docs/`) on the default branch, strips YAML frontmatter, 16KB cap, returns null on any failure.
9ab6971Claude	325	- `src/lib/unread.ts` — unread count helper (never throws)
	326	- `src/lib/repo-bootstrap.ts` — green defaults on repo creation
	327	- `src/lib/gate.ts` — gate orchestration + persistence
	328	- `src/lib/cache.ts` — LRU cache, git-cache invalidation
6fc53bdClaude	329	- `src/lib/reactions.ts` — `summariseReactions`, `toggleReaction`, `ALLOWED_EMOJIS`, `EMOJI_GLYPH`, `isAllowedEmoji`, `isAllowedTarget`
9ab6971Claude	330
	331	### 4.6 Routes (locked endpoints — behaviour must be preserved)
	332	- `src/routes/git.ts` — Smart HTTP (clone/push)
	333	- `src/routes/api.ts` — REST (`POST /api/repos`, `GET /api/users/:u/repos`, `GET /api/repos/:o/:n`, `POST /api/setup`)
ad6d4adClaude	334	- `src/routes/hooks.ts` — `POST /api/hooks/gatetest` (bearer/HMAC), `GET /api/hooks/ping`, `POST /api/v1/gate-runs` (PAT backup), `GET /api/v1/gate-runs`. See `GATETEST_HOOK.md`.
6fc53bdClaude	335	- `src/routes/theme.ts` — `GET /theme/toggle`, `GET /theme/set?mode=`. Writes `theme` cookie (`dark`\|`light`, 1-year). Layout reads via pre-paint inline script.
	336	- `src/routes/audit.tsx` — `GET /settings/audit` (personal) + `GET /:owner/:repo/settings/audit` (owner-only).
24cf2caClaude	337	- `src/routes/saved-replies.tsx` — `GET/POST /settings/replies`, `POST /settings/replies/:id`, `POST /settings/replies/:id/delete`, `GET /api/user/replies`. Unique constraint `saved_replies_user_shortcut`.
	338	- `src/routes/deployments.tsx` — `GET /:owner/:repo/deployments` (grouped by env, success-rate rollup), `GET /:owner/:repo/deployments/:id` (detail).
6fc53bdClaude	339	- `src/routes/reactions.ts` — `POST /api/reactions/:targetType/:targetId/:emoji/toggle` (authed, form- or fetch-compatible), `GET /api/reactions/:targetType/:targetId`. Targets: `issue\|pr\|issue_comment\|pr_comment`. Emojis: 8 canonical.
9ab6971Claude	340	- `src/routes/auth.tsx` — register / login / logout
	341	- `src/routes/web.tsx` — home / new / browse / blob / commits / raw / blame / star / search / profile
	342	- `src/routes/issues.tsx` — issue CRUD + comments + labels + lock
	343	- `src/routes/pulls.tsx` — PR CRUD + review + merge + close
	344	- `src/routes/editor.tsx` — web file editor
	345	- `src/routes/compare.tsx` — base...head diff
24cf2caClaude	346	- `src/routes/settings.tsx` — profile + password + email notification preferences (`POST /settings/notifications`)
9ab6971Claude	347	- `src/routes/repo-settings.tsx` — repo settings + delete
	348	- `src/routes/webhooks.tsx` — webhook CRUD + test + `fireWebhooks`
	349	- `src/routes/fork.ts` — fork
	350	- `src/routes/explore.tsx` — discover
	351	- `src/routes/tokens.tsx` — personal access tokens
	352	- `src/routes/contributors.tsx` — contributor list
	353	- `src/routes/notifications.tsx` — inbox + unread API
	354	- `src/routes/dashboard.tsx` — authed home (`renderDashboard` exported)
	355	- `src/routes/ask.tsx` — global + repo AI chat + explain
	356	- `src/routes/releases.tsx` — tags + AI changelog
	357	- `src/routes/gates.tsx` — history + settings + branch protection UI
	358	- `src/routes/insights.tsx` — insights + milestones
	359	- `src/routes/search.tsx` — global search + `/shortcuts`
	360	- `src/routes/health.ts` — `/healthz` `/readyz` `/metrics`
6563f0aClaude	361	- `src/routes/orgs.tsx` — `/orgs` list, `/orgs/new` create, `/orgs/:slug` profile, `/orgs/:slug/people` + add/role/remove, `/orgs/:slug/teams` + create, `/orgs/:slug/teams/:teamSlug` + member add/remove. All require auth. Role guards via `orgRoleAtLeast`; last-owner cannot be demoted or removed; every write path `audit()`'d.
058d752Claude	362	- `src/lib/orgs.ts` (Block B1) — `isValidSlug` (rejects reserved + too-short/long + consecutive/leading/trailing hyphens), `normalizeSlug`, `orgRoleAtLeast` (owner>admin>member), `isValidOrgRole`, `isValidTeamRole`, `loadOrgForUser`, `listOrgsForUser`, `listOrgMembers`, `listTeamsForOrg`, `listTeamMembers`, `__test` export for unit tests.
	363	- `src/routes/settings-2fa.tsx` (Block B4) — TOTP enroll / verify / disable + recovery codes UI. All require auth.
	364	- `src/routes/passkeys.tsx` (Block B5) — WebAuthn passkey registration / assertion / management. All require auth.
	365	- `src/routes/oauth.tsx` (Block B6) — OAuth 2.0 authorize + token + userinfo endpoints.
	366	- `src/routes/developer-apps.tsx` (Block B6) — developer-facing OAuth app CRUD (`/settings/developer/apps`), client secret rotation, audit-logged.
5e888b7Claude	367	- `src/routes/workflows.tsx` (Block C1) — Actions UI. `GET /:owner/:repo/actions`, `GET /:owner/:repo/actions/runs/:runId`, `POST /:owner/:repo/actions/:workflowId/run` (auth+owner), `POST /:owner/:repo/actions/runs/:runId/cancel` (auth+owner). Manual runs are `event=manual`, ref=default branch.
25a91a6Claude	368	- `src/routes/packages-api.ts` (Block C2) — npm protocol: `GET/PUT/DELETE /npm/*` (packument, tarball, publish, yank); JSON helpers at `/api/packages/:owner/:repo/...`. PAT (`glc_`) bearer auth.
	369	- `src/routes/packages.tsx` (Block C2) — UI: `/:owner/:repo/packages` list + `/:owner/:repo/packages/:pkgName` detail.
	370	- `src/routes/pages.tsx` (Block C3) — `GET /:owner/:repo/pages/*` serves static files from latest gh-pages commit (binary via `getRawBlob`, text via `getBlob`). `GET/POST /:owner/:repo/settings/pages` settings + redeploy.
	371	- `src/routes/environments.tsx` (Block C4) — settings CRUD at `/:owner/:repo/settings/environments`; approval endpoints at `/:owner/:repo/deployments/:id/{approve,reject}`.
3cbe3d6Claude	372	- `src/routes/ai-explain.tsx` (Block D6) — `GET /:owner/:repo/explain` (softAuth), `POST /:owner/:repo/explain/regenerate` (requireAuth, owner-only).
	373	- `src/routes/ai-changelog.tsx` (Block D7) — `GET /:owner/:repo/ai/changelog` (softAuth). Form + rendered output; `?format=markdown` returns `text/markdown`.
	374	- `src/routes/copilot.ts` (Block D9) — `POST /api/copilot/completions` (requireAuth, 60/min rate limit), `GET /api/copilot/ping` (public).
	375	- `src/routes/dep-updater.tsx` (Block D2) — `GET /:owner/:repo/settings/dep-updater` + `POST /:owner/:repo/settings/dep-updater/run` (requireAuth, owner-only).
	376	- `src/routes/semantic-search.tsx` (Block D1) — `GET /:owner/:repo/search/semantic?q=` (softAuth) + `POST /:owner/:repo/search/semantic/reindex` (requireAuth, owner-only).
9ab6971Claude	377
	378	### 4.7 Views (locked contracts)
	379	- `src/views/layout.tsx` — `Layout` accepts `title`, `user`, `notificationCount`
3cbe3d6Claude	380	- `src/views/components.tsx` — `RepoHeader`, `RepoNav` (active: `code\|issues\|pulls\|commits\|releases\|actions\|gates\|insights\|explain\|changelog\|semantic`), `RepoCard`, etc.
6fc53bdClaude	381	- `src/views/reactions.tsx` — `ReactionsBar` (no-JS compatible, form-per-emoji)
	382	- Nav links: logo · search · theme-toggle · Explore · Ask · Notifications · New · Profile (or Sign in / Register)
9ab6971Claude	383	- Keyboard chords: `/`, `Cmd+K`, `?`, `n`, `g d`, `g n`, `g e`, `g a`
	384
	385	### 4.8 Tests (locked)
	386	- `src/__tests__/green-ecosystem.test.ts` — secret scanner, codeowners, AI fallback, health, rate-limit headers, `/shortcuts`, `/search`
	387	- All other existing test files — do not delete without owner permission
	388
	389	### 4.9 Invariants (never break these)
	390	- `isAiAvailable()` guard returns true fallback strings when no ANTHROPIC_API_KEY. AI features degrade gracefully.
	391	- `getUnreadCount` never throws; returns 0 on any error.
	392	- Rate-limit middleware adds `X-RateLimit-Limit` + `X-RateLimit-Remaining` to every response, including 500s.
	393	- `c.header("X-Request-Id", ...)` set by request-context on every response.
	394	- Secret scanner skips binary/lock paths (`shouldSkipPath`).
	395	- `SECRET_PATTERNS` is an exported array. Its shape is `{ type, regex, severity }`.
6fc53bdClaude	396	- Theme routes live outside `/settings/*` (they must work for logged-out visitors). Cookie name: `theme`, values: `dark\|light`.
	397	- Draft PRs cannot be merged — `/pulls/:n/merge` returns a redirect with the draft error when `pr.isDraft=true`.
	398	- Reactions API accepts only `ALLOWED_EMOJIS` and `ALLOWED_TARGETS`. Toggle is idempotent per (user, target, emoji).
24cf2caClaude	399	- `sendEmail()` never throws — always resolves to `{ ok, provider, ... }`. Email failures never break notification delivery or the primary request path.
	400	- Email fan-out in `notify()` is scoped to kinds in `EMAIL_ELIGIBLE` (mention / review_requested / assigned / gate_failed). Each eligible kind maps to exactly one user preference column.
	401	- Issue + PR template loading must return `null` on any git-subprocess failure (templates are a convenience, not a requirement). Forms always render.
9ab6971Claude	402
	403	---
	404
	405	## 5. OPERATIONAL NOTES
	406
	407	### 5.1 Running locally
	408	```bash
	409	bun install
	410	bun dev # hot reload
24cf2caClaude	411	bun test # 99 tests currently pass
9ab6971Claude	412	bun run db:migrate
	413	```
	414
	415	### 5.2 Environment
	416	- `DATABASE_URL` — Neon Postgres
	417	- `ANTHROPIC_API_KEY` — unlocks AI features
	418	- `GIT_REPOS_PATH` — default `./repos`
	419	- `PORT` — default 3000
24cf2caClaude	420	- `EMAIL_PROVIDER` — `log` (default, stderr-only) or `resend`
	421	- `EMAIL_FROM` — sender address for outbound mail
	422	- `RESEND_API_KEY` — required when `EMAIL_PROVIDER=resend`
	423	- `APP_BASE_URL` — canonical URL used to build absolute links in emails
3cbe3d6Claude	424	- `VOYAGE_API_KEY` — optional; when set, D1 semantic search uses Voyage `voyage-code-3` embeddings. Otherwise falls back to a deterministic 512-dim hashing embedder.
9ab6971Claude	425
	426	### 5.3 Models
	427	- `claude-sonnet-4-20250514` — code review, security, chat
	428	- `claude-haiku-4-5-20251001` — commit messages, summaries, light tasks
	429	- Swap via `MODEL_SONNET` / `MODEL_HAIKU` constants in `src/lib/ai-client.ts`
	430
	431	### 5.4 Deployment
	432	- `railway.toml` / `fly.toml` present
	433	- Crontech deploy on green push to default branch (can opt out via `autoDeployEnabled`)
	434
	435	---
	436
	437	## 6. SESSION WORKFLOW (WHAT THE NEXT AGENT DOES)
	438
	439	1. Read this file, `CLAUDE.md`, `README.md`, `git log -1 --stat`.
	440	2. Check `git status` + current branch.
	441	3. Pick the next unfinished block from §3 (lowest letter + number first, unless owner specifies).
	442	4. Create a todo list that mirrors the sub-items of that block.
	443	5. Build. Write tests. Run `bun test`.
	444	6. Commit with `feat(<BLOCK-ID>): ...`.
	445	7. Push.
	446	8. Update this file:
	447	- Move the block's row in §2 to ✅ where applicable.
	448	- Add the block's files to §4 LOCKED BLOCKS.
	449	- Commit + push again.
	450	9. Start the next block. Do not stop to ask.
	451
	452	If a block is too large for a single session, split it into a sub-plan at the top of the session, ship what you can, and document what's left at the end of this file under a `## 7. IN-FLIGHT` section.
	453
	454	---
	455
	456	## 7. IN-FLIGHT
	457
	458	(Intentionally empty. Add here if a block is partially complete at session end.)